Southern Blot Hybridization Protocols
 
Protocol 2. Protocol for Southern Blotting of Genimic DNA
 
Protocol 3. DNA Analysis by Southern Blotting
 
Protocol 4. Southern Blot Analysis
 
Protocol 4. Southern Blot Method
 
Gel Electrophoresis (Video)
 
Southern Blot Animation
 
Commonly Used Reagents and Buffer Solutions for Southern Blot

 

3M ammonium acetate

  • Dissolve 231.24g of ammonium acetate in 1 liter dH2O.

10X TBE

  • 100 gm/L     (0.89M Tris) MW 121.14
  • 55 gm/L     (0.89M Boric acid) MW 61.83
  • 40ml of 0.5M EDTA disodium

Adjust pH to 8.0 with 1:10 diluted HCl.

 

20X SSC

  • 3M NaCl
  • 0.3M sodium citrate

100X Denhardt's Solution

  • 2% bovine serum albumin
  • 2% polyvinylpyrrolidone [Sigma]
  • 2% ficoll

Denaturing Solution

  • 0.5M NaOH
  • 1.0M NaCl

DNA Loading Dye

  • 15% ficoll [F-4375 Sigma]
  • 10% glycerol
  • 0.05% bromophenol blue
  • 1X TBE buffer

Weigh 15g of ficoll and add 50-100mg of bromophenol blue, then add 10ml of glycerol and 90ml of 1X TBE.

Place this mixture on a hot plate with a magnetic stirrer and allow to dissolve and make up to 100ml with 1X TBE.

 

DNA Lysis Buffer

  • 100mM NaCl
  • 10mM Tris-HCl pH 8.0
  • 25mM EDTA (disodium salt)
  • 0.5% of sodium dodecyl sulphate
  • 0.1mg/ml Proteinase K

Ethidium Bromide

  • 10mg of ethidium bromide powder
  • 1ml of dH2O

Neutralizing Solution

  • 1.5M Tris (pH 8.0)
  • 1.0M NaCl
 
 

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